MLP - Mean Log P Analysis
Pathway analysis based on p-values associated to genes from a genes expression analysis of interest. Utility functions enable to extract pathways from the Gene Ontology Biological Process (GOBP), Molecular Function (GOMF) and Cellular Component (GOCC), Kyoto Encyclopedia of Genes of Genomes (KEGG) and Reactome databases. Methodology, and helper functions to display the results as a table, barplot of pathway significance, Gene Ontology graph and pathway significance are available.
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geneticsgeneexpressionpathwaysreactomekegggo
4.78 score 1 dependents 8 scripts 510 downloadskm.ci - Confidence Intervals for the Kaplan-Meier Estimator
Computes various confidence intervals for the Kaplan-Meier estimator, namely: Peto's CI, Rothman CI, CI's based on Greenwood's variance, Thomas and Grunkemeier CI and the simultaneous confidence bands by Nair and Hall and Wellner.
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3.56 score 1 stars 3 dependents 62 scripts 6.6k downloadsmpm - Multivariate Projection Methods
Exploratory graphical analysis of multivariate data, specifically gene expression data with different projection methods: principal component analysis, correspondence analysis, spectral map analysis.
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3.03 score 3 dependents 12 scripts 422 downloadsSDaA - Sampling: Design and Analysis
Functions and Datasets from Lohr, S. (1999), Sampling: Design and Analysis, Duxbury.
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2.65 score 1 dependents 15 scripts 552 downloadshelloJavaWorld - Hello Java World
A dummy package to demonstrate how to interface to a jar file that resides inside an R package.
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openjdk
2.00 score 7 scripts 189 downloadsRSBJson - Handle R Requests from R Service Bus Applications with JSON Payloads
Package to Handle R Requests from R Service Bus Applications with JSON Payloads in a generic way. The incoming request is encoded as a string (character vector of length one) containing the JSON file passed through by the client.
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1.00 score 5 scripts 179 downloads